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SRX22751129: culture 1 (C1), Methanococcus maripaludis JJ, first selenium depleted growth, replicate 2
1 ILLUMINA (Illumina NovaSeq 6000) run: 4.3M spots, 439.1M bases, 137.1Mb downloads

Design: Total RNA of Methanococcus maripaludis JJ was isolated from cells grown on fructose. Strand specific libraries were build using the NEBNext Ultra II Directional RNA Library Prep Kit. Libraries were sequenced on an Illumina NovaSeq 6000
Submitted by: Georg-August-University Goettingen
Study: Methanococcus maripaludis Raw sequence reads
show Abstracthide Abstract
The archaeal model organism Methanococcus maripaludis JJ is known to utilize selenium in its primary energy metabolism, the hydrogenotrophic methanogenesis. Selenium is incorporated into selenocysteine-(Sec-) containing enzymes (selenoproteins) which are essential in methanogenesis. In case of a selenium-depleted environment, the type strain M. maripaludis JJ employs a second set of enzymes containing cysteine (Cys) instead of Sec. So far, the genes coding for these Sec-/Cys-containing isoforms are the only genes known with expression influenced by the selenium status of the cell. Utilizing transcriptomics the selenium-responsive regulon has been assessed.
Sample: Microbe sample from Methanococcus maripaludis
SAMN38639743 • SRS19739444 • All experiments • All runs
Library:
Name: MEMA_t_16
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM PCR
Layout: PAIRED
Runs: 1 run, 4.3M spots, 439.1M bases, 137.1Mb
Run# of Spots# of BasesSizePublished
SRR270616454,304,676439.1M137.1Mb2023-12-05

ID:
30788278

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